PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g005270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 337aa    MW: 38188.6 Da    PI: 5.9876
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g005270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444.1e-14134180354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  Csa06g005270.1 134 KSHSEAERRRRERINTHLAKLRSILPNT-----TKTDKASLLAEVIQHMKEL 180
                     79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.85131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11134180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14135189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-14135190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-13137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-4144183No hitNo description
Gene3DG3DSA:3.30.70.2604.7E-4218269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MYAMKEEDCL QTFHNLQDYQ DQFLLHHHPQ ILPWSSSSLP SFDPTHFPSN PTRYSDPVHC  60
FDRRASASSS SFNYNDSFVS PPPSMEHHQN HLRILSEALG PIMRRGSSFG FDGEIMGKLS  120
AQEVMDAKAL AASKSHSEAE RRRRERINTH LAKLRSILPN TTKTDKASLL AEVIQHMKEL  180
KRQTSLITDT CQVPTEPDDL TVDSAYNDEE GNLVIRASFC CQDRTDLMHD VINALKSLRL  240
RTLKAEIATV GGRVKNVLFL SREDDEEDHD GDDMEGYDAE RMMNDRVSSI EEALKAVIEK  300
CVHNNDESND NNNLEKSSSG SIKRQRTSKM VNRCYN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0588400.0AY058840.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds.
GenBankAY0790330.0AY079033.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds.
GenBankAY0863830.0AY086383.1 Arabidopsis thaliana clone 247881 mRNA, complete sequence.
GenBankDQ2056790.0DQ205679.1 Arabidopsis thaliana ABA-regulated protein AIG1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514188.10.0PREDICTED: transcription factor AIG1-like
SwissprotQ9LS080.0BH032_ARATH; Transcription factor AIG1
TrEMBLD7LQT50.0D7LQT5_ARALL; Putative uncharacterized protein
STRINGAT3G25710.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139491725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.10.0basic helix-loop-helix 32